Match details
Record ID:
NRN_AX093000
Database:
nrnl1
Go to original record
Description:
Sequence 5 from Patent WO0118192. CLEAN SYNTHETIC VECTORS, PLASMIDS, TRANSGENIC PLANTS AND PLANT PARTS CONTAINING THEM, AND METHODS FOR OBTAINING THEM.
Taxon:
unidentified
Original size:
6017 bp
Patents:
WO0118192 (lens , espacenet )
JP2003509027 (lens , espacenet )
View other 9 matches for this record
View other 1572 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
5424
5587
-
164 bp
1 ttcccctcgg tatccaatta gagtctcata tttactctca atccaaataa
51 tctgcatccg gatctggatc gtttcgcatg attgaacaag atggattgca
101 cgcaggttct ccggccgctt gggtggagag gctattcggc tatgactggg
151 cacaacagac aatc
View other 35 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
23 bp
0
0
1
23
2.02e-10
primerB
100.0
22 bp
0
0
164
143
6.85e-10
probe
100.0
25 bp
0
0
141
117
1.75e-11
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.