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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Match details

Record ID: NRN_AX765918
Database: nrnl1 Go to original record
Description: Sequence 4 from Patent WO02097097. Sequence 10 from Patent WO2004020642. Sequence 4 from patent US 7172881. Sequence 10 from patent US 7262338. Sequence 4 from patent US 8030470. Sequence 4 from Patent EP2123763.
Taxon: unidentified
Original size: 5250 bp
Patents: WO02097097 (lens, espacenet) WO2004020642 (lens, espacenet) US7172881 (lens, espacenet) US2003167535 (lens, espacenet) US7262338 (lens, espacenet) US2004010821 (lens, espacenet) US8030470 (lens, espacenet) EP2123763 (lens, espacenet)

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Method: QL-ELE-00-009 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of nopaline synthase terminator (Lipp et al.,2001).
Target:T-nos

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 4449 4566 + 118 bp
Amplicon: 118 bp 
1     gcatgacgtt atttatgaga tgggttttta tgattagagt cccgcaatta
51    tacatttaat acgcgataga aaacaaaata tagcgcgcaa actaggataa
101   attatcgcgc gcggtgtc

View other 15178 matches with an identical amplicon

Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 24 bp 0 0 1 24 4.22e-11
primerB 100.0 24 bp 0 0 118 95 4.22e-11

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.