Match details
Record ID:
NRN_A29189
Database:
nrnl1
Go to original record
Description:
Acetyltranferase DNA with SalI linker from patent WO9111511 Synthetic DNA for phosphinothricin resistance gene (viral/herbicide resistance) from patent WO9111517 Sequence 1 from patent US 5908810. Sequence 1 from patent US 5633434.
Taxon:
unidentified
Original size:
559 bp
Patents:
WO9111511 (lens , espacenet )
WO9111517 (lens , espacenet )
US5908810 (lens , espacenet )
US5633434 (lens , espacenet )
View other 2 matches for this record
View other 1741 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
63
170
+
108 bp
1 cgcggtttgt gatatcgtta accattacat tgagacgtct acagtgaact
51 ttaggacaga gccacaaaca ccacaagagt ggattgatga tctagagagg
101 ttgcaaga
View other 1557 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
22 bp
0
0
1
22
4.75e-10
primerB
100.0
25 bp
0
0
108
84
1.20e-11
probe
100.0
29 bp
0
0
53
81
8.17e-14
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.