Match details
Record ID: |
NRN_FV532179 |
Database: |
nrnl1 |
Go to original record |
Description: |
CORN PLANT AND SEED CORRESPONDING TO TRANSGENIC EVENT MON89034 AND METHODS FOR DETECTION THEREOF. Sequence 5 from patent US 8062840. |
Taxon: |
unidentified |
Original size: |
12208 bp |
Patents: |
JP2009538153 (lens, espacenet)
US8062840 (lens, espacenet)
|
View other 16 matches for this record
View other 7 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11275 |
11351 |
+ |
77 bp |
|
1 ttctccatat tgaccatcat actcattgca tccccggaaa ttatgttttt
51 ttaaaaacca cggtattata gataccg
View other 7 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
27 bp |
0 |
0 |
1 |
27 |
7.13e-13 |
primerB |
100.0 |
28 bp |
0 |
0 |
77 |
50 |
2.07e-13 |
probe |
100.0 |
18 bp |
0 |
0 |
30 |
47 |
4.25e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.