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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Match details

Record ID: NRN_FB654917
Database: nrnl1 Go to original record
Description: Sequence 1 from Patent EP1876173. Sequence 1 from Patent EP1878720. Sequence 1 from Patent WO2002018369. Sequence 1 from Patent EP1849797. Peptidomimetic Protease Inhibitors. Peptidomimetic Protease Inhibitors. Sequence 1 from Patent EP1958956. Sequence 1 from patent US 7820671. Sequence 1 from patent US 8252923. JP 2011079835-A/1: Peptidomimetic Protease Inhibitors. Sequence 1 from Patent EP2368901. Sequence 1 from Patent EP2368877. Sequence 1 from Patent EP2368878.
Taxon: unidentified
Original size: 900 bp
Patents: EP1876173 (lens, espacenet) EP1878720 (lens, espacenet) EP1878720 (lens, espacenet) WO2002018369 (lens, espacenet) WO0218369 (lens, espacenet) EP1849797 (lens, espacenet) JP2007284444 (lens, espacenet) JP2004517047 (lens, espacenet) EP1958956 (lens, espacenet) US7820671 (lens, espacenet) US8252923 (lens, espacenet) JP2011079835 (lens, espacenet) EP2368901 (lens, espacenet) EP2368877 (lens, espacenet) EP2368878 (lens, espacenet)

View other 1 match for this record

Method: QL-ELE-00-003 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of Neomycin phosphotransferase II gene (BVL L 00.00-31, 1998)
Target:nptII

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 398 570 + 173 bp
Amplicon: 173 bp 
1     ggatctcctg tcatctcacc ttgctcctgc cgagaaagta tccatcatgg
51    ctgatgcaat gcggcggctg catacgcttg atccggctac ctgcccattc
101   gaccaccaag cgaaacatcg catcgagcga gcacgtactc ggatggaagc
151   cggtcttgtc gatcaggatg atc

View other 57974 matches with an identical amplicon

Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 16 bp 0 0 1 16 1.08e-06
primerB 100.0 16 bp 0 0 173 158 1.08e-06

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.