Match details

Record ID: NRN_AR232930
Database: nrnl1 Go to original record
Description: Sequence 1 from patent US 6455759.
Taxon: unidentified
Original size: 4544 bp
Patents: US6455759 (lens, espacenet) US6455759 (lens, espacenet)

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Method: QL-ELE-00-009 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of nopaline synthase terminator (Lipp et al.,2001).
Target:T-nos

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 4407 4520 + 114 bp

Amplicon: 114 bp
1     gcatgacgtt atttatgaga tgggttttat gattagagtc ccgcaattat
51    acatttaata cgcgatagaa aacaaaatat agcgcgacta ggataaatta
101   tcgcgcgcgg tgtc 

View other 1 match with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 24 bp 0 0 1 24 4.34e-11
primerB 100.0 24 bp 0 0 114 91 4.34e-11


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.