Match details
Record ID: |
NRN_BD014472 |
Database: |
nrnl1 |
Go to original record |
Description: |
Transgenic corn and method of detecting recombinant gene from foods containing the same. |
Taxon: |
unidentified |
Original size: |
892 bp |
Patents: |
JP2001136983 (lens, espacenet)
|
View other 3 matches for this record
Method: |
QL-CON-00-003 |
Go to GMOMETHODS record |
|
View in JRC GMO-Matrix
|
Description: | Qualitative PCR method for detection of the junction between the intron 2 from the maize adh1 gene and the pat gene(ISO/FDIS 21569:2005). |
Target: | IVS2-pat |
View other 11 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
232 |
420 |
+ |
189 bp |
|
1 ctgggaggcc aaggtatcta atcagccatc ccatttgtga tctttgtcag
51 tagatatgat acaacaactc gcggttgact tgcgccttct tggcggctta
101 tctgtctcag gggcagactc ccgtgttccc tcggatctcg acatgtctcc
151 ggagaggaga ccagttgaga ttaggccagc tacagcagc
View other 11 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
22 bp |
0 |
0 |
1 |
22 |
7.94e-10 |
primerB |
100.0 |
22 bp |
0 |
0 |
189 |
168 |
7.94e-10 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.