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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Match details

Record ID: NRN_AR110600
Database: nrnl1 Go to original record
Description: Sequence 7 from patent US 6114608. Sequence 7 from patent US 6229075. Sequence 7 from patent US 6232533. Sequence 7 from patent US 6232534. Sequence 7 from patent US 6342660. Sequence 7 from patent US 6399860. Sequence 7 from patent US 6573438.
Taxon: unidentified
Original size: 568 bp
Patents: US6114608 (lens, espacenet) US6229075 (lens, espacenet) US6229075 (lens, espacenet) US6232533 (lens, espacenet) US6232533 (lens, espacenet) US6232534 (lens, espacenet) US6232534 (lens, espacenet) US6342660 (lens, espacenet) US6342660 (lens, espacenet) US6399860 (lens, espacenet) US6399860 (lens, espacenet) US6573438 (lens, espacenet) US6573438 (lens, espacenet)

View other 2 matches for this record

Method: QL-ELE-00-021 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of phosphinothricin N-acetyltransferase (pat) gene (Barbau-Piednoir et al., 2014).
Target:pat

View other 1706 matches for this method

Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 61 169 + 109 bp
Amplicon: 109 bp 
1     ccgcggtttg tgatatcgtt aaccattaca ttgagacgtc tacagtgaac
51    tttaggacag agccacaaac accacaagag tggattgatg atctagagag
101   gttgcaaga

View other 1557 matches with an identical amplicon

Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 20 bp 0 0 1 20 5.47e-09
primerB 100.0 25 bp 0 0 109 85 1.21e-11

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.