European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Match details

Record ID: NRN_AR110594
Database: nrnl1 Go to original record
Description: Sequence 1 from patent US 6114608. Sequence 1 from patent US 6229075. Sequence 1 from patent US 6232533. Sequence 1 from patent US 6232534. Sequence 1 from patent US 6342660. Sequence 1 from patent US 6399860. Sequence 1 from patent US 6573438.
Taxon: unidentified
Original size: 532 bp
Patents: US6114608 (lens, espacenet) US6229075 (lens, espacenet) US6229075 (lens, espacenet) US6232533 (lens, espacenet) US6232533 (lens, espacenet) US6232534 (lens, espacenet) US6232534 (lens, espacenet) US6342660 (lens, espacenet) US6342660 (lens, espacenet) US6399860 (lens, espacenet) US6399860 (lens, espacenet) US6573438 (lens, espacenet) US6573438 (lens, espacenet)

View other 6 matches for this record

Method: QT-ELE-00-004 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Quantitative PCR method for detection of Cauliflower Mosaic Virus 35S promoter
Target:CaMV P-35S

View other 15625 matches for this method

Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
1 0 181 262 + 82 bp
Amplicon: 82 bp 
1     gcctctaccg acagtggtcc caaagatgga cccccaccca cgaggaacat
51    cgtggaaaaa gaagacgttc caaccacgtc tt

View other 1467 matches with an identical amplicon

Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerB 100.0 22 bp 0 0 82 61 3.55e-10
probe 100.0 22 bp 0 0 21 42 3.55e-10

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.