Match details

Record ID:	NRN_JA687154
Database:	nrnl1	Go to original record
Description:	Sequence 6 from Patent WO2011153186.
Taxon:	unidentified
Original size:	6126 bp
Patents:	WO2011153186 (lens, espacenet)

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Method:	QL-ELE-00-015	Go to GMOMETHODS record
		View in JRC GMO-Matrix
Description:	Qualitative PCR method for detection of Figwort Mosaic Virus 35S promoter
Target:	P-FMV

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Predicted amplification details:

Mismatches	Gaps	From	To	Strand	Amplicon size
0	0	1230	1307	+	78 bp

Amplicon:

78 bp

1     caaaataacg tggaaaagag ctgtcctgac agcccactca ctaatgcgta
51    tgacgaacgc agtgacgacc acaaaaga

View other 445 matches with an identical amplicon

Primers and probe alignment:

Primer/Probe	% Identity	Length	Mismatches	Gaps	From	To	Score
primerA	100.0	22 bp	0	0	1	22	3.36e-10
primerB	100.0	20 bp	0	0	78	59	3.84e-09
probe	100.0	22 bp	0	0	26	47	3.36e-10

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.