Match details

Record ID: NRN_HI574809
Database: nrnl1 Go to original record
Description: Sequence 19 from Patent EP2219434.
Taxon: unidentified
Original size: 12159 bp
Patents: EP2219434 (lens, espacenet)

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Method: QL-ELE-00-005 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of Cauliflower Mosaic Virus 35S promoter (ISO/FDIS 21569:2005).
Target:CaMV P-35S

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
1 0 11433 11626 - 194 bp

Amplicon: 194 bp
1     gcacctacaa atgccatcat tgcgataaag gaaaggctat cgttcaagat
51    gctctgccga cagtggtccc aaagatggac ccccacccac gaggagcatc
101   gtggaaaaag aagacgttcc aaccacgtct tcaaagcaag tggattgatg
151   tgatatctcc actgacgtaa gggatgacgc acaatcccac tatc 

View other 53 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 94.7 19 bp 1 0 1 19 1.43e-06
primerB 100.0 20 bp 0 0 194 175 9.23e-09


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.