Match details

Record ID: NRN_GX641316
Database: nrnl1 Go to original record
Description: Sequence 31 from patent US 7812223. Sequence 31 from patent US 8158859. Sequence 1 from Patent WO2009058947. Sequence 1 from Patent WO2009061776. Sequence 31 from Patent WO2009073605. Sequence 1 from Patent WO2009126359. Sequence 1 from Patent WO2009132057. Sequence 1 from Patent WO2010006010. Sequence 1 from Patent WO2010011907. Sequence 1 from Patent WO2010019872. Sequence 1 from Patent WO2010053621. Sequence 1 from Patent WO2010077890. Sequence 1 from Patent WO2010104848. Sequence 1 from Patent WO2010144276. Sequence 1 from Patent WO2011008510. Sequence 1 from Patent WO2011046772. Sequence 1 from Patent EP2511374. Sequence 1 from Patent WO2012087903.
Taxon: unidentified
Original size: 18491 bp
Patents: US7812223 (lens, espacenet) US8158859 (lens, espacenet) WO2009058947 (lens, espacenet) WO2009061776 (lens, espacenet) WO2009073605 (lens, espacenet) WO2009126359 (lens, espacenet) WO2009132057 (lens, espacenet) WO2010006010 (lens, espacenet) WO2010011907 (lens, espacenet) WO2010019872 (lens, espacenet) WO2010053621 (lens, espacenet) WO2010077890 (lens, espacenet) WO2010104848 (lens, espacenet) WO2010144276 (lens, espacenet) WO2011008510 (lens, espacenet) WO2011046772 (lens, espacenet) EP2511374 (lens, espacenet) WO2012087903 (lens, espacenet)

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Method: QT-ELE-00-004 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Quantitative PCR method for detection of Cauliflower Mosaic Virus 35S promoter
Target:CaMV P-35S

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 179 260 - 82 bp

Amplicon: 82 bp
1     gcctctgccg acagtggtcc caaagatgga cccccaccca cgaggagcat
51    cgtggaaaaa gaagacgttc caaccacgtc tt 

View other 26489 matches with an identical amplicon


Primers and probe alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 18 bp 0 0 1 18 4.54e-08
primerB 100.0 22 bp 0 0 82 61 3.55e-10
probe 100.0 22 bp 0 0 21 42 3.55e-10


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.