Match details

Record ID: NRN_GM702761
Database: nrnl1 Go to original record
Description: Sequence 4914 from Patent WO2008088422. Sequence 4914 from patent US 7803769. Sequence 4914 from patent US 7820623. Sequence 4914 from patent US 7825093. Sequence 4914 from patent US 7834164. Sequence 4914 from patent US 7910102. Sequence 4914 from patent US 8043829.
Taxon: unidentified
Original size: 6587 bp
Patents: WO2008088422 (lens, espacenet) US7803769 (lens, espacenet) US7820623 (lens, espacenet) US7825093 (lens, espacenet) US7834164 (lens, espacenet) US7910102 (lens, espacenet) US8043829 (lens, espacenet)

View other 1 match for this record


Method: QL-ELE-00-003 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of Neomycin phosphotransferase II gene (BVL L 00.00-31, 1998)
Target:nptII

View other 58813 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 3221 3393 - 173 bp

Amplicon: 173 bp
1     ggatctcctg tcatctcacc ttgctcctgc cgagaaagta tccatcatgg
51    ctgatgcaat gcggcggctg catacgcttg atccggctac ctgcccattc
101   gaccaccaag cgaaacatcg catcgagcga gcacgtactc ggatggaagc
151   cggtcttgtc gatcaggatg atc 

View other 57974 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 16 bp 0 0 1 16 1.08e-06
primerB 100.0 16 bp 0 0 173 158 1.08e-06


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.