Match details
Record ID:
NRN_AX093007
Database:
nrnl1
Go to original record
Description:
Sequence 12 from Patent WO0118192. CLEAN SYNTHETIC VECTORS, PLASMIDS, TRANSGENIC PLANTS AND PLANT PARTS CONTAINING THEM, AND METHODS FOR OBTAINING THEM.
Taxon:
unidentified
Original size:
9143 bp
Patents:
WO0118192 (lens , espacenet )
JP2003509027 (lens , espacenet )
View other 15 matches for this record
View other 1572 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
5424
5586
-
163 bp
1 ttcccctcgg tatccaatta gagtctcata tttactctca atccaaataa
51 tctgcaccgg atctggatcg tttcgcatga ttgaacaaga tggattgcac
101 gcaggttctc cggccgcttg ggtggagagg ctattcggct atgactgggc
151 acaacagaca atc
View other 11 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
23 bp
0
0
1
23
2.01e-10
primerB
100.0
22 bp
0
0
163
142
6.81e-10
probe
100.0
25 bp
0
0
140
116
1.74e-11
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.