Match details

Record ID: NRN_GN123178
Database: nrnl1 Go to original record
Description: Sequence 6074 from Patent WO2009037329. Sequence 38 from Patent WO2009077611. Sequence 21 from Patent WO2009106596. Sequence 51 from Patent WO2010020654. Sequence 51 from Patent WO2010034672. Sequence 51 from Patent WO2010046221.
Taxon: unidentified
Original size: 8588 bp
Patents: WO2009037329 (lens, espacenet) WO2009077611 (lens, espacenet) WO2009106596 (lens, espacenet) WO2010020654 (lens, espacenet) WO2010034672 (lens, espacenet) WO2010046221 (lens, espacenet)

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Method: QL-ELE-00-018 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of nopaline synthase terminator (Barbau-Piednoir et al., 2014).
Target:T-nos

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
1 0 1868 1936 + 69 bp

Amplicon: 69 bp
1     gattagagtc ccgcaattat acatttaata cgcgatagaa aacaaaatat
51    agcgcgcaaa ctaggataa 

View other 15381 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 28 bp 0 0 1 28 1.84e-13
primerB 96.0 25 bp 1 0 69 45 9.65e-11


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.