Match details

Record ID: NRN_GM716131
Database: nrnl1 Go to original record
Description: Sequence 159 from Patent WO2008100545. Sequence 482 from Patent WO2008124048. Sequence 30 from Patent WO2008128240. Sequence 159 from patent US 8013215. Sequence 30 from patent US 8119860. Sequence 59 from patent US 8188338. Sequence 59 from Patent WO2008124806.
Taxon: unidentified
Original size: 7872 bp
Patents: WO2008100545 (lens, espacenet) WO2008124048 (lens, espacenet) WO2008128240 (lens, espacenet) US8013215 (lens, espacenet) US8119860 (lens, espacenet) US8188338 (lens, espacenet) WO2008124806 (lens, espacenet)

View other 12 matches for this record


Method: QL-ELE-00-006 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of nopaline synthase terminator (L 00.00-31, 1998).
Target:T-nos

View other 15527 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 2446 2625 - 180 bp

Amplicon: 180 bp
1     gaatcctgtt gccggtcttg cgatgattat catataattt ctgttgaatt
51    acgttaagca tgtaataatt aacatgtaat gcatgacgtt atttatgaga
101   tgggttttta tgattagagt cccgcaatta tacatttaat acgcgataga
151   aaacaaaata tagcgcgcaa actaggataa  

View other 29619 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 20 bp 0 0 1 20 8.54e-09
primerB 100.0 20 bp 0 0 180 161 8.54e-09


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.