Match details
Record ID: NRN_GM961480
Database:
nrnl1
Go to original record
Description:
Sequence 8434 from Patent WO2008142034. Sequence 14393 from Patent WO2009037279. Sequence 6065 from Patent WO2009037329. Sequence 2903 from Patent WO2009077611. Sequence 12 from Patent WO2009106596. Sequence 42 from Patent WO2010020654. Sequence 42 from Patent WO2010034672. Sequence 5 from Patent WO2010037714. Sequence 42 from Patent WO2010046221.
Taxon:
unidentified
Original size:
9466 bp
Patents:
WO2008142034 (lens , espacenet )
WO2009037279 (lens , espacenet )
WO2009037329 (lens , espacenet )
WO2009077611 (lens , espacenet )
WO2009106596 (lens , espacenet )
WO2010020654 (lens , espacenet )
WO2010034672 (lens , espacenet )
WO2010037714 (lens , espacenet )
WO2010046221 (lens , espacenet )
View other 8 matches for this record
Method: QL-ELE-00-013
Go to GMOMETHODS record
View in JRC GMO-Matrix
Description: Qualitative duplex PCR method for detection of Cauliflower Mosaic Virus 35S promoter and nopaline synthase terminator (partim T-nos) (Waiblinger et al., 2008).
Target: T-nos
View other 15584 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
2707
2790
+
84 bp
1 catgtaatgc atgacgttat ttatgagatg ggtttttatg attagagtcc
51 cgcaattata catttaatac gcgatagaaa acaa
View other 30799 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
25 bp
0
0
1
25
9.20e-12
primerB
100.0
25 bp
0
0
84
60
9.20e-12
probe
100.0
28 bp
0
0
28
55
2.28e-13
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
