Match details
View other 199 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
103
231
+
129 bp
1 cccatcgaca tcagcctgag cctgacccag ttcctgctga gcgagttcgt
51 gcccggcgcc ggcttcgtgc tgggcctggt ggacatcatc tggggcatct
101 tcggccccag ccagtgggac gccttcctg
View other 183 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
21 bp
0
0
1
21
1.93e-09
primerB
100.0
20 bp
0
0
129
110
6.52e-09
probe
100.0
21 bp
0
0
86
66
1.93e-09
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.