Match details
Record ID: |
KY464890.1 |
Database: |
emblreltgn |
Go to original record |
Description: |
Nicotiana benthamiana transgenic NptII (aph(3')-II (or nptII)) and modified green fluorescent protein mGFP5-ER genes, complete cds; and transposon Tn5393 TnpA (tnpA) and TnpR (tnpR) genes, complete cds. |
Taxon: |
Nicotiana benthamiana |
Original size: |
9484 bp |
View other 45 matches for this record
View other 10854 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
4578 |
4772 |
+ |
195 bp |
|
1 gctcctacaa atgccatcat tgcgataaag gaaaggccat cgttgaagat
51 gcctctgccg acagtggtcc caaagatgga cccccaccca cgaggagcat
101 cgtggaaaaa gaagacgttc caaccacgtc ttcaaagcaa gtggattgat
151 gtgatatctc cactgacgta agggatgacg cacaatccca ctatc
View other 8169 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
19 bp |
0 |
0 |
1 |
19 |
3.10e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
195 |
176 |
9.28e-09 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.