Match details
Record ID: |
JQ406879.1 |
Database: |
emblreltgn |
Go to original record |
Description: |
Zea mays transgenic MON810 5' insertion site genomic sequence. |
Taxon: |
Zea mays |
Original size: |
1018 bp |
View other 3 matches for this record
View other 6 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
906 |
997 |
+ |
92 bp |
|
1 tcgaaggacg aaggactcta acgtttaaca tcctttgcca ttgcccagct
51 atctgtcact ttattgtgaa gatagtggaa aaggaaggtg gc
View other 13 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
24 bp |
0 |
0 |
1 |
24 |
3.46e-11 |
primerB |
100.0 |
24 bp |
0 |
0 |
92 |
69 |
3.46e-11 |
probe |
100.0 |
23 bp |
0 |
0 |
27 |
49 |
1.18e-10 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.