Match details
Record ID: |
GP619843.1 |
Database: |
emblrelpat |
Go to original record |
Description: |
Sequence 27847 from patent US 7560542. |
Taxon: |
unidentified |
Original size: |
441 bp |
Patents: |
US7560542 (lens, espacenet)
|
View other 3 matches for this record
Method: |
QT-TAX-ZM-007 |
Go to GMOMETHODS record |
Description: | Quantitative droplet digital PCR method for detection of maize high-mobility-group gene (Gatto et al., 2022). |
Target: | maize high-mobility-group |
View other 8 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
293 |
371 |
+ |
79 bp |
|
1 ttggactaga aatctcgtgc tgattaattg ttttacgcgt gcgtttgtgt
51 ggattgtagg acaaggctcc ctatgtagc
View other 35 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
23 bp |
0 |
0 |
1 |
23 |
1.00e-10 |
primerB |
100.0 |
22 bp |
0 |
0 |
79 |
58 |
3.41e-10 |
probe |
100.0 |
23 bp |
0 |
0 |
56 |
34 |
1.00e-10 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.