Match details
| Record ID: |
EA419703.1 |
| Database: |
emblrelpat |
Go to original record |
| Description: |
Sequence 23 from patent US 7323556. |
| Taxon: |
unidentified |
| Original size: |
11922 bp |
| Patents: |
US7323556 (lens, espacenet)
|
View other 13 matches for this record
| Method: |
QT-CON-00-005 |
Go to GMOMETHODS record |
|
View in JRC GMO-Matrix
|
|
| Description: | Quantitative PCR method for detection of the junction between the phosphinothricin N-acetyltransferase gene and the CaMV 35S terminator. |
| Target: | pat-CaMV T-35S |
View other 222 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
9456 |
9604 |
+ |
149 bp |
|
1 gccagttagg ccagttaccc agatctgagt cgacctgcag gcatgcccgc
51 tgaaatcacc agtctctctc tacaaatcta tctctctcta taataatgtg
101 tgagtagttc ccagataagg gaattagggt tcttataggg tttcgctca
View other 150 matches with an identical amplicon
| Primers and probe alignment: |
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
21 bp |
0 |
0 |
1 |
21 |
2.09e-09 |
| primerB |
100.0 |
24 bp |
0 |
0 |
149 |
126 |
5.39e-11 |
| probe |
100.0 |
22 bp |
0 |
0 |
36 |
57 |
6.20e-10 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
