Match details

Record ID: EA135457.1
Database: emblrelpat Go to original record
Description: Sequence 15 from patent US 7223902.
Taxon: unidentified
Original size: 3329 bp
Patents: US7223902 (lens, espacenet)

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Method: QL-ELE-00-007 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of nopaline synthase terminator (EU-Project SMT4-CT96-2072:1998).
Target:T-nos

View other 15527 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
2 1 3090 3275 + 186 bp

Amplicon: 186 bp
1     gaatcctgtt gccggtcttg cgatgattat catataattt ctgttgaatt
51    acgttaagca tgtaataatt aaacatgtaa tgcatgacgt tatttatgag
101   atggggtttt tatgattaag agtccccgca attatacatt ttaatacgcg
151   atagaaaaac aaaatatagc gcccaaacta aggata 

View other 7 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 20 bp 0 0 1 20 8.84e-09


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.