Match details
Record ID: |
AR882131.1 |
Database: |
emblrelpat |
Go to original record |
Description: |
Sequence 10 from patent US 7049421. |
Taxon: |
unidentified |
Original size: |
13737 bp |
View other 18 matches for this record
View other 205 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11340 |
11450 |
- |
111 bp |
|
1 aagttcattt catttggaga ggacagggta cccggggatc ctctagagtc
51 gacatgtctc cggagaggag accagttgag attaggccag ctacagcagc
101 tgatatggcc g
View other 19 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
25 bp |
0 |
0 |
1 |
25 |
1.24e-11 |
primerB |
100.0 |
21 bp |
0 |
0 |
111 |
91 |
1.65e-09 |
probe |
100.0 |
28 bp |
0 |
0 |
60 |
87 |
2.89e-13 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.