Match details
Record ID: |
HW254238.1 |
Database: |
emblrelpat |
Go to original record |
Description: |
JP 2013514780-A/2: ENDPOINT TAQMAN METHODS FOR DETERMINING ZYGOSITY OF CORN COMPRISING TC1507 EVENTS. |
Taxon: |
synthetic construct |
Original size: |
2346 bp |
Patents: |
JP2013514780 (lens, espacenet)
|
View other 1 match for this record
View other 1741 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1152 |
1259 |
- |
108 bp |
|
1 cgcggtttgt gatatcgtta accattacat tgagacgtct acagtgaact
51 ttaggacaga gccacaaaca ccacaagagt ggattgatga tctagagagg
101 ttgcaaga
View other 1557 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
22 bp |
0 |
0 |
1 |
22 |
4.75e-10 |
primerB |
100.0 |
25 bp |
0 |
0 |
108 |
84 |
1.20e-11 |
probe |
100.0 |
29 bp |
0 |
0 |
53 |
81 |
8.17e-14 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.