Match details

Record ID: DM137625.1
Database: emblrelpat Go to original record
Description: SOYBEAN EVENT MON89788 AND METHODS FOR DETECTION THEREOF.
Taxon: synthetic construct
Original size: 6466 bp
Patents: JP2008545413 (lens, espacenet)

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Method: QL-ELE-00-019 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of CP4 epsps gene (Barbau-Piednoir et al., 2014).
Target:CP4-EPSPS

View other 281 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
1 0 3159 3266 + 108 bp

Amplicon: 108 bp
1     gcatgcttca cggtgcaagc agccgtccag caactgctcg taagtcctct
51    ggtctttctg gaaccgtccg tattccaggt gacaagtcta tctcccacag
101   gtccttca 

View other 96 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 18 bp 0 0 1 18 6.07e-08


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.