Match details

Record ID: CS559097.1
Database: emblrelpat Go to original record
Description: Sequence 12 from Patent WO2006032426.
Taxon: synthetic construct
Original size: 10765 bp
Patents: WO2006032426 (lens, espacenet)

View other 22 matches for this record


Method: QL-ELE-00-006 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of nopaline synthase terminator (L 00.00-31, 1998).
Target:T-nos

View other 15527 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
1 0 237 416 - 180 bp

Amplicon: 180 bp
1     gaatcctgtt gccggacttg cgatgattat catataattt ctgttgaatt
51    acgttaagca tgtaataatt aacatgtaat gcatgacgtt atttatgaga
101   tgggttttta tgattagagt cccgcaatta tacatttaat acgcgataga
151   aaacaaaata tagcgcgcaa actaggataa  

View other 7 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 95.0 20 bp 1 0 1 20 3.97e-07
primerB 100.0 20 bp 0 0 180 161 8.54e-09


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.