Match details
Record ID: |
HK481999.1 |
Database: |
emblrelpat |
Go to original record |
Description: |
Sequence 9 from patent US 8969006. |
Taxon: |
unidentified |
Original size: |
6466 bp |
Patents: |
US8969006 (lens, espacenet)
|
View other 5 matches for this record
View other 23 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1068 |
1206 |
+ |
139 bp |
|
1 tcccgctcta gcgcttcaat cgtggttatc aagctccaaa cactgatagt
51 ttaaactgaa ggcgggaaac gacaatctga tccccatcaa gctctagcta
101 gagcggccgc gttatcaagc ttctgcaggt cctgctcga
View other 23 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
7.05e-09 |
primerB |
100.0 |
19 bp |
0 |
0 |
139 |
121 |
2.37e-08 |
probe |
100.0 |
24 bp |
0 |
0 |
56 |
79 |
5.02e-11 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.