Match details
| Record ID: | CS079678.1 | |
|---|---|---|
| Database: | emblrelpat | Go to original record |
| Description: | Sequence 2 from Patent EP1528105. | |
| Taxon: | Arabidopsis thaliana | |
| Original size: | 2709 bp | |
| Patents: | EP1528105 (lens, espacenet) | |
View other 5 matches for this record
| Method: | QL-ELE-00-009 | Go to GMOMETHODS record |
|---|---|---|
| View in JRC GMO-Matrix | ||
| Description: | Qualitative PCR method for detection of nopaline synthase terminator (Lipp et al.,2001). | |
| Target: | T-nos | |
View other 14132 matches for this method
Predicted amplification details:
| Mismatches | Gaps | From | To | Strand | Amplicon size |
|---|---|---|---|---|---|
| 0 | 0 | 2567 | 2684 | + | 118 bp |
| Amplicon: | 118 bp |
|---|
1 GCATGACGTT ATTTATGAGA TGGGTTTTTA TGATTAGAGT CCCGCAATTA 51 TACATTTAAT ACGCGATAGA AAACAAAATA TAGCGCGCAA ACTAGGATAA 101 ATTATCGCGC GCGGTGTC
View other 13841 matches with an identical amplicon
Primers alignment:
| Primer/Probe | % Identity | Length | Mismatches | Gaps | From | To | Score |
|---|---|---|---|---|---|---|---|
| primerA | 100.0 | 24 bp | 0 | 0 | 2567 | 2590 | 1.56e-10 |
| primerB | 100.0 | 24 bp | 0 | 0 | 2684 | 2661 | 1.56e-10 |
Related publications:
- Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
- Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.