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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 42 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF019297.1 nt Zea mays starch synthase isoform zS... 2480 bp Zea mays QT-TAX-ZM-006 151 bp View
AR106493.1 emblrelpat Sequence 10 from patent US 6107060. 2097 bp unidentified QT-TAX-ZM-006 151 bp View
AY109714.1 nt Zea mays CL171_2 mRNA sequence. 2498 bp Zea mays QT-TAX-ZM-006 151 bp View
BD071185.1 emblrelpat JP 2001519664-A/24: Plant like star... 2423 bp Zea mays QT-TAX-ZM-006 151 bp View
BD170160.1 emblrelpat WO 2002034943-A/73: Method of quant... 1102 bp synthetic construct QT-TAX-ZM-006 151 bp View
BD170161.1 emblrelpat WO 2002034943-A/74: Method of quant... 1071 bp synthetic construct QT-TAX-ZM-006 151 bp View
BD295580.1 emblrelpat WO 2003027283-A/21: Nucleic acid fr... 1135 bp synthetic construct QT-TAX-ZM-006 172 bp View
BT065903.1 nt Zea mays full-length cDNA clone ZM_... 2585 bp Zea mays QT-TAX-ZM-006 151 bp View
DI201815.1 emblrelpat KR 1020110126306-A/55: A method for... 2480 bp artificial sequences QT-TAX-ZM-006 151 bp View
EA032601.1 emblrelpat Sequence 10 from patent US 7141659. 2097 bp unidentified QT-TAX-ZM-006 151 bp View
EA306374.1 emblrelpat Sequence 52 from patent US 7285703. 2423 bp unidentified QT-TAX-ZM-006 151 bp View
GX183321.1 emblrelpat Sequence 73 from patent US 7709232. 1102 bp unidentified QT-TAX-ZM-006 151 bp View
GX183322.1 emblrelpat Sequence 74 from patent US 7709232. 1071 bp unidentified QT-TAX-ZM-006 151 bp View
GX326062.1 emblrelpat Sequence 20137 from patent US 7750207. 2826 bp unidentified QT-TAX-ZM-006 151 bp View
GY200770.1 emblrelpat Sequence 350 from patent US 7939708. 558 bp unidentified QT-TAX-ZM-006 151 bp View
HC894591.1 emblrelpat Sequence 4743 from Patent EP2194140. 2480 bp Zea mays QT-TAX-ZM-006 151 bp View
HC907854.1 emblrelpat Sequence 18007 from Patent EP2194140. 2480 bp Zea mays QT-TAX-ZM-006 151 bp View
HI294592.1 emblrelpat Sequence 10150 from Patent EP2051986. 558 bp Zea mays QT-TAX-ZM-006 151 bp View
HK423039.1 emblrelpat Sequence 4743 from patent US 8952217. 2480 bp unidentified QT-TAX-ZM-006 151 bp View
HK429601.1 emblrelpat Sequence 18007 from patent US 8952217. 2480 bp unidentified QT-TAX-ZM-006 151 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.