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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 94 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
BT016836.1 nt Zea mays clone Contig669 mRNA sequence. 1458 bp Zea mays QT-TAX-ZM-004 69 bp View
BT034157.1 nt Zea mays full-length cDNA clone ZM_... 1336 bp Zea mays QT-TAX-ZM-004 69 bp View
EU952418.1 nt Zea mays clone 1280021 fructose-bis... 1143 bp Zea mays QT-TAX-ZM-004 69 bp View
GN080649.1 emblrelpat Sequence 416 from Patent WO2009029771. 379 bp Zea mays QT-TAX-ZM-004 69 bp View
GN080651.1 emblrelpat Sequence 418 from Patent WO2009029771. 362 bp Zea mays QT-TAX-ZM-004 69 bp View
GP522608.1 emblrelpat Sequence 9083 from patent US 7572902. 359 bp unidentified QT-TAX-ZM-004 69 bp View
GP527391.1 emblrelpat Sequence 13866 from patent US 7572902. 649 bp unidentified QT-TAX-ZM-004 69 bp View
GP594223.1 emblrelpat Sequence 2227 from patent US 7560542. 381 bp unidentified QT-TAX-ZM-004 69 bp View
GP623234.1 emblrelpat Sequence 31238 from patent US 7560542. 442 bp unidentified QT-TAX-ZM-004 69 bp View
GP624002.1 emblrelpat Sequence 32006 from patent US 7560542. 400 bp unidentified QT-TAX-ZM-004 69 bp View
GP624026.1 emblrelpat Sequence 32030 from patent US 7560542. 430 bp unidentified QT-TAX-ZM-004 69 bp View
GP637412.1 emblrelpat Sequence 45416 from patent US 7560542. 431 bp unidentified QT-TAX-ZM-004 69 bp View
GP638021.1 emblrelpat Sequence 46025 from patent US 7560542. 400 bp unidentified QT-TAX-ZM-004 69 bp View
GP638680.1 emblrelpat Sequence 46684 from patent US 7560542. 340 bp unidentified QT-TAX-ZM-004 69 bp View
GP640941.1 emblrelpat Sequence 48945 from patent US 7560542. 427 bp unidentified QT-TAX-ZM-004 69 bp View
GP656623.1 emblrelpat Sequence 64627 from patent US 7560542. 455 bp unidentified QT-TAX-ZM-004 69 bp View
GP660500.1 emblrelpat Sequence 68504 from patent US 7560542. 417 bp unidentified QT-TAX-ZM-004 69 bp View
GP669132.1 emblrelpat Sequence 77136 from patent US 7560542. 400 bp unidentified QT-TAX-ZM-004 69 bp View
GY161712.1 emblrelpat Sequence 9083 from patent US 7919608. 359 bp unidentified QT-TAX-ZM-004 69 bp View
GY166495.1 emblrelpat Sequence 13866 from patent US 7919608. 649 bp unidentified QT-TAX-ZM-004 69 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.