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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 94 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_GP660500 nrnl1 Sequence 68504 from patent US 7560542. 417 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GP669132 nrnl1 Sequence 77136 from patent US 7560542. 400 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GY200880 nrnl1 Sequence 460 from patent US 7939708. 888 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GY200889 nrnl1 Sequence 469 from patent US 7939708. 390 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GY200891 nrnl1 Sequence 471 from patent US 7939708. 1300 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GY200892 nrnl1 Sequence 472 from patent US 7939708. 415 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GY200893 nrnl1 Sequence 473 from patent US 7939708. 1332 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GY200894 nrnl1 Sequence 474 from patent US 7939708. 441 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GY200895 nrnl1 Sequence 475 from patent US 7939708. 1272 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GY200897 nrnl1 Sequence 477 from patent US 7939708. 390 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GY200899 nrnl1 Sequence 479 from patent US 7939708. 371 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GY200900 nrnl1 Sequence 480 from patent US 7939708. 1373 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GZ316977 nrnl1 Sequence 2693 from patent US 8183436. 1527 bp unidentified QT-TAX-ZM-004 69 bp View
X12872.1 nt Maize anaerobically regulated gene ... 3324 bp Zea mays QT-TAX-ZM-004 69 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.