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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 94 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MO153463.1 emblrelpat Sequence 416 from patent US 10323255. 379 bp unidentified QT-TAX-ZM-004 69 bp View
MO153465.1 emblrelpat Sequence 418 from patent US 10323255. 362 bp unidentified QT-TAX-ZM-004 69 bp View
MO457083.1 emblrelpat Sequence 1337 from patent US 10457952. 1697 bp unidentified QT-TAX-ZM-004 69 bp View
MV640291.1 emblrelpat Sequence 416 from patent US 10760095. 379 bp unidentified QT-TAX-ZM-004 69 bp View
MV640293.1 emblrelpat Sequence 418 from patent US 10760095. 362 bp unidentified QT-TAX-ZM-004 69 bp View
MV984141.1 emblrelpat Sequence 416 from patent US 10844399. 379 bp unidentified QT-TAX-ZM-004 69 bp View
MV984143.1 emblrelpat Sequence 418 from patent US 10844399. 362 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GN080649 nrnl1 Sequence 416 from Patent WO20090297... 379 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GN080651 nrnl1 Sequence 418 from Patent WO20090297... 362 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GP522608 nrnl1 Sequence 9083 from patent US 757290... 359 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GP527391 nrnl1 Sequence 13866 from patent US 75729... 649 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GP594223 nrnl1 Sequence 2227 from patent US 7560542. 381 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GP623234 nrnl1 Sequence 31238 from patent US 7560542. 442 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GP624002 nrnl1 Sequence 32006 from patent US 7560542. 400 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GP624026 nrnl1 Sequence 32030 from patent US 7560542. 430 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GP637412 nrnl1 Sequence 45416 from patent US 7560542. 431 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GP638021 nrnl1 Sequence 46025 from patent US 7560542. 400 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GP638680 nrnl1 Sequence 46684 from patent US 7560542. 340 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GP640941 nrnl1 Sequence 48945 from patent US 7560542. 427 bp unidentified QT-TAX-ZM-004 69 bp View
NRN_GP656623 nrnl1 Sequence 64627 from patent US 7560542. 455 bp unidentified QT-TAX-ZM-004 69 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.