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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 94 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GZ670945.1 emblrelpat Sequence 43102 from patent US 8344211. 660 bp unidentified QT-TAX-ZM-004 72 bp View
GZ676068.1 emblrelpat Sequence 52032 from patent US 8344211. 618 bp unidentified QT-TAX-ZM-004 69 bp View
GZ685613.1 emblrelpat Sequence 68080 from patent US 8344211. 678 bp unidentified QT-TAX-ZM-004 69 bp View
GZ690535.1 emblrelpat Sequence 76398 from patent US 8344211. 854 bp unidentified QT-TAX-ZM-004 69 bp View
HL026511.1 emblrelpat Sequence 416 from patent US 9095113. 379 bp unidentified QT-TAX-ZM-004 69 bp View
HL026513.1 emblrelpat Sequence 418 from patent US 9095113. 362 bp unidentified QT-TAX-ZM-004 69 bp View
HL145051.1 emblrelpat Sequence 416 from patent US 9119365. 379 bp unidentified QT-TAX-ZM-004 69 bp View
HL145053.1 emblrelpat Sequence 418 from patent US 9119365. 362 bp unidentified QT-TAX-ZM-004 69 bp View
JB180524.1 emblrelpat Sequence 416 from Patent EP2476763. 379 bp Zea mays QT-TAX-ZM-004 69 bp View
JB180526.1 emblrelpat Sequence 418 from Patent EP2476763. 362 bp Zea mays QT-TAX-ZM-004 69 bp View
KH513907.1 emblrelpat Sequence 1337 from patent US 9551006. 1697 bp unidentified QT-TAX-ZM-004 69 bp View
M16220.1 nt Maize (Z.mays) aldolase mRNA, compl... 1388 bp Zea mays QT-TAX-ZM-004 69 bp View
MI250488.1 emblrelpat Sequence 416 from patent US 9828610. 379 bp unidentified QT-TAX-ZM-004 69 bp View
MI250490.1 emblrelpat Sequence 418 from patent US 9828610. 362 bp unidentified QT-TAX-ZM-004 69 bp View
MI382918.1 emblrelpat Sequence 416 from patent US 9862966. 379 bp unidentified QT-TAX-ZM-004 69 bp View
MI382920.1 emblrelpat Sequence 418 from patent US 9862966. 362 bp unidentified QT-TAX-ZM-004 69 bp View
MI440345.1 emblrelpat Sequence 1916 from patent US 9902956. 1336 bp unidentified QT-TAX-ZM-004 69 bp View
MI440346.1 emblrelpat Sequence 1917 from patent US 9902956. 1388 bp unidentified QT-TAX-ZM-004 69 bp View
MM915635.1 emblrelpat Sequence 416 from patent US 10301644. 379 bp unidentified QT-TAX-ZM-004 69 bp View
MM915637.1 emblrelpat Sequence 418 from patent US 10301644. 362 bp unidentified QT-TAX-ZM-004 69 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.