European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 187 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY421713.1 nt Synthetic construct CA gene, comple... 4326 bp synthetic construct QT-ELE-00-003 129 bp View
KY421714.1 nt Synthetic construct CAL gene, compl... 4350 bp synthetic construct QT-ELE-00-003 129 bp View
KY421715.1 nt Synthetic construct CACL gene, comp... 4398 bp synthetic construct QT-ELE-00-003 129 bp View
MI175730.1 emblrelpat Sequence 18 from patent US 9809826. 8546 bp unidentified QT-ELE-00-003 129 bp View
MI175749.1 emblrelpat Sequence 37 from patent US 9809826. 8599 bp unidentified QT-ELE-00-003 129 bp View
MI175750.1 emblrelpat Sequence 38 from patent US 9809826. 15162 bp unidentified QT-ELE-00-003 129 bp View
MI175751.1 emblrelpat Sequence 39 from patent US 9809826. 15162 bp unidentified QT-ELE-00-003 129 bp View
MI382444.1 emblrelpat Sequence 20 from patent US 9862960. 1848 bp unidentified QT-ELE-00-003 129 bp View
MM801274.1 emblrelpat Sequence 45 from patent US 10239921. 1821 bp unidentified QT-ELE-00-003 129 bp View
MM801287.1 emblrelpat Sequence 71 from patent US 10239921. 1947 bp unidentified QT-ELE-00-003 129 bp View
MO693577.1 emblrelpat Sequence 18 from patent US 10538777. 8546 bp unidentified QT-ELE-00-003 129 bp View
MO693596.1 emblrelpat Sequence 37 from patent US 10538777. 8599 bp unidentified QT-ELE-00-003 129 bp View
MO693597.1 emblrelpat Sequence 38 from patent US 10538777. 15162 bp unidentified QT-ELE-00-003 129 bp View
MO693598.1 emblrelpat Sequence 39 from patent US 10538777. 15162 bp unidentified QT-ELE-00-003 129 bp View
NRN_A64187 nrnl1 Sequence 53 from Patent WO9726339. ... 3474 bp unidentified QT-ELE-00-003 129 bp View
NRN_A64188 nrnl1 Sequence 54 from Patent WO9726339. ... 3508 bp unidentified QT-ELE-00-003 129 bp View
NRN_A64189 nrnl1 Sequence 55 from Patent WO9726339. ... 1961 bp unidentified QT-ELE-00-003 129 bp View
NRN_AX033516 nrnl1 Sequence 24 from Patent DE19906169.... 136 bp unidentified QT-ELE-00-003 136 bp View
NRN_AX392800 nrnl1 Sequence 3 from Patent WO0215701. ... 1896 bp unidentified QT-ELE-00-003 129 bp View
NRN_AX392802 nrnl1 Sequence 5 from Patent WO0215701. ... 3582 bp unidentified QT-ELE-00-003 129 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.