European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 187 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
I41419.1 emblrelpat Sequence 3 from patent US 5625136. 1947 bp unidentified QT-ELE-00-003 129 bp View
I41420.1 emblrelpat Sequence 4 from patent US 5625136. 3468 bp unidentified QT-ELE-00-003 129 bp View
I41423.1 emblrelpat Sequence 8 from patent US 5625136. 3468 bp unidentified QT-ELE-00-003 129 bp View
I41424.1 emblrelpat Sequence 10 from patent US 5625136. 3546 bp unidentified QT-ELE-00-003 129 bp View
I41425.1 emblrelpat Sequence 12 from patent US 5625136. 3546 bp unidentified QT-ELE-00-003 129 bp View
I41426.1 emblrelpat Sequence 14 from patent US 5625136. 3546 bp unidentified QT-ELE-00-003 129 bp View
I41427.1 emblrelpat Sequence 16 from patent US 5625136. 3547 bp unidentified QT-ELE-00-003 129 bp View
I41431.1 emblrelpat Sequence 27 from patent US 5625136. 3546 bp unidentified QT-ELE-00-003 129 bp View
JA216541.1 emblrelpat Sequence 18 from Patent EP2309843. 8546 bp synthetic construct QT-ELE-00-003 129 bp View
JA216560.1 emblrelpat Sequence 37 from Patent EP2309843. 8599 bp synthetic construct QT-ELE-00-003 129 bp View
JA216561.1 emblrelpat Sequence 38 from Patent EP2309843. 15162 bp synthetic construct QT-ELE-00-003 129 bp View
JA216562.1 emblrelpat Sequence 39 from Patent EP2309843. 15162 bp synthetic construct QT-ELE-00-003 129 bp View
JC210271.1 emblrelpat Sequence 20 from Patent EP2440035. 1848 bp synthetic construct QT-ELE-00-003 129 bp View
KF303141.1 nt Synthetic construct Cry1AcCry1I gen... 4137 bp synthetic construct QT-ELE-00-003 129 bp View
KH478139.1 emblrelpat Sequence 45 from patent US 9522937. 1821 bp unidentified QT-ELE-00-003 129 bp View
KH478152.1 emblrelpat Sequence 71 from patent US 9522937. 1947 bp unidentified QT-ELE-00-003 129 bp View
KJ716232.1 nt Synthetic construct strain TG1 Cry1... 4164 bp synthetic construct QT-ELE-00-003 129 bp View
KJ716233.1 nt Synthetic construct strain TG1 Cry1... 4164 bp synthetic construct QT-ELE-00-003 129 bp View
KJ716234.1 nt Synthetic construct strain TG1 Cry2... 4164 bp synthetic construct QT-ELE-00-003 129 bp View
KJ716235.1 nt Synthetic construct strain TG1 Cry2... 4164 bp synthetic construct QT-ELE-00-003 129 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.