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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 187 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ977667.1 nt Pseudomonas sp. I-09 CRY-PCR signal... 1633 bp Pseudomonas sp. I-09 QT-ELE-00-003 129 bp View
E29366.1 emblrelpat Method for detecting insect-toleran... 1947 bp unidentified QT-ELE-00-003 129 bp View
FB292239.1 emblrelpat Sequence 8 from Patent WO2006107954. 3468 bp synthetic construct QT-ELE-00-003 129 bp View
FB292240.1 emblrelpat Sequence 9 from Patent WO2006107954. 1947 bp synthetic construct QT-ELE-00-003 129 bp View
FB292241.1 emblrelpat Sequence 10 from Patent WO2006107954. 3468 bp synthetic construct QT-ELE-00-003 129 bp View
GX731785.1 emblrelpat Sequence 7 from patent US 7834254. 3546 bp unidentified QT-ELE-00-003 129 bp View
GZ591550.1 emblrelpat Sequence 45 from patent US 8309516. 1821 bp unidentified QT-ELE-00-003 129 bp View
GZ591563.1 emblrelpat Sequence 71 from patent US 8309516. 1947 bp unidentified QT-ELE-00-003 129 bp View
HI470714.1 emblrelpat Sequence 45 from Patent EP2137211. 1821 bp synthetic construct QT-ELE-00-003 129 bp View
HI470740.1 emblrelpat Sequence 71 from Patent EP2137211. 1947 bp synthetic construct QT-ELE-00-003 129 bp View
HJ186531.1 emblrelpat Sequence 18 from patent US 8344209. 8546 bp unidentified QT-ELE-00-003 129 bp View
HJ186550.1 emblrelpat Sequence 37 from patent US 8344209. 8599 bp unidentified QT-ELE-00-003 129 bp View
HJ186551.1 emblrelpat Sequence 38 from patent US 8344209. 15162 bp unidentified QT-ELE-00-003 129 bp View
HJ186552.1 emblrelpat Sequence 39 from patent US 8344209. 15162 bp unidentified QT-ELE-00-003 129 bp View
HJ713192.1 emblrelpat Sequence 20 from patent US 8642839. 1848 bp unidentified QT-ELE-00-003 129 bp View
HL190586.1 emblrelpat Sequence 7 from patent US 9131651. 3546 bp unidentified QT-ELE-00-003 129 bp View
HV195898.1 emblrelpat JP 2000511543-A/28: Method of contr... 3474 bp Zea mays QT-ELE-00-003 129 bp View
HV195899.1 emblrelpat JP 2000511543-A/29: Method of contr... 3508 bp Zea mays QT-ELE-00-003 129 bp View
HV195900.1 emblrelpat JP 2000511543-A/30: Method of contr... 1961 bp Zea mays QT-ELE-00-003 129 bp View
I41418.1 emblrelpat Sequence 2 from patent US 5625136. 3468 bp unidentified QT-ELE-00-003 129 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.