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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 187 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
BD493264.1 emblrelpat Novel insecticidal toxins derived f... 14603 bp synthetic construct QT-ELE-00-003 129 bp View
BD493265.1 emblrelpat Novel insecticidal toxins derived f... 11127 bp synthetic construct QT-ELE-00-003 129 bp View
CS468144.1 emblrelpat Sequence 7 from Patent WO2006128569. 3546 bp synthetic construct QT-ELE-00-003 129 bp View
CS468163.1 emblrelpat Sequence 7 from Patent WO2006128568. 3546 bp synthetic construct QT-ELE-00-003 129 bp View
CS469183.1 emblrelpat Sequence 7 from Patent WO2006128573. 3546 bp synthetic construct QT-ELE-00-003 129 bp View
CS469228.1 emblrelpat Sequence 7 from Patent WO2006128571. 3546 bp synthetic construct QT-ELE-00-003 129 bp View
CS469240.1 emblrelpat Sequence 7 from Patent WO2006128572. 3546 bp synthetic construct QT-ELE-00-003 129 bp View
CS469246.1 emblrelpat Sequence 5 from Patent WO2006128570. 3546 bp synthetic construct QT-ELE-00-003 129 bp View
DI007237.1 emblrelpat Novel insecticidal toxins derived f... 16179 bp unidentified QT-ELE-00-003 129 bp View
DI017662.1 emblrelpat Novel insecticidal toxins derived f... 2007 bp unidentified QT-ELE-00-003 129 bp View
DI019310.1 emblrelpat Novel insecticidal toxins derived f... 14946 bp unidentified QT-ELE-00-003 129 bp View
DI032572.1 emblrelpat Novel insecticidal toxins derived f... 3582 bp unidentified QT-ELE-00-003 129 bp View
DI038369.1 emblrelpat Novel insecticidal toxins derived f... 13269 bp unidentified QT-ELE-00-003 129 bp View
DI055447.1 emblrelpat Novel insecticidal toxins derived f... 14603 bp unidentified QT-ELE-00-003 129 bp View
DI059465.1 emblrelpat Novel insecticidal toxins derived f... 15643 bp unidentified QT-ELE-00-003 129 bp View
DI062046.1 emblrelpat Novel insecticidal toxins derived f... 15503 bp unidentified QT-ELE-00-003 129 bp View
DI076399.1 emblrelpat Novel insecticidal toxins derived f... 1896 bp unidentified QT-ELE-00-003 129 bp View
DI081070.1 emblrelpat Novel insecticidal toxins derived f... 3582 bp unidentified QT-ELE-00-003 129 bp View
DI091422.1 emblrelpat Novel insecticidal toxins derived f... 11127 bp unidentified QT-ELE-00-003 129 bp View
DI201811.1 emblrelpat KR 1020110126306-A/51: A method for... 1947 bp artificial sequences QT-ELE-00-003 129 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.