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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 187 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AX392810.1 emblrelpat Sequence 13 from Patent WO0215701. 15643 bp synthetic construct QT-ELE-00-003 129 bp View
AX392811.1 emblrelpat Sequence 14 from Patent WO0215701. 15503 bp synthetic construct QT-ELE-00-003 129 bp View
AX392812.1 emblrelpat Sequence 15 from Patent WO0215701. 14946 bp synthetic construct QT-ELE-00-003 129 bp View
AX392813.1 emblrelpat Sequence 16 from Patent WO0215701. 14603 bp synthetic construct QT-ELE-00-003 129 bp View
AX392814.1 emblrelpat Sequence 17 from Patent WO0215701. 11127 bp synthetic construct QT-ELE-00-003 129 bp View
AX441371.1 emblrelpat Sequence 2 from Patent EP1209237. 3468 bp synthetic construct QT-ELE-00-003 129 bp View
AX441372.1 emblrelpat Sequence 3 from Patent EP1209237. 1947 bp synthetic construct QT-ELE-00-003 129 bp View
AX441373.1 emblrelpat Sequence 4 from Patent EP1209237. 3468 bp synthetic construct QT-ELE-00-003 129 bp View
AX441377.1 emblrelpat Sequence 8 from Patent EP1209237. 3468 bp synthetic construct QT-ELE-00-003 129 bp View
AX441379.1 emblrelpat Sequence 10 from Patent EP1209237. 3546 bp synthetic construct QT-ELE-00-003 129 bp View
AX441381.1 emblrelpat Sequence 12 from Patent EP1209237. 3546 bp synthetic construct QT-ELE-00-003 129 bp View
AX441383.1 emblrelpat Sequence 14 from Patent EP1209237. 3546 bp synthetic construct QT-ELE-00-003 129 bp View
AX441385.1 emblrelpat Sequence 16 from Patent EP1209237. 3547 bp synthetic construct QT-ELE-00-003 129 bp View
AX441396.1 emblrelpat Sequence 27 from Patent EP1209237. 3546 bp synthetic construct QT-ELE-00-003 129 bp View
AX453867.1 emblrelpat Sequence 2 from Patent EP1213356. 3468 bp synthetic construct QT-ELE-00-003 129 bp View
AX453868.1 emblrelpat Sequence 3 from Patent EP1213356. 1947 bp synthetic construct QT-ELE-00-003 129 bp View
AX453869.1 emblrelpat Sequence 4 from Patent EP1213356. 3468 bp synthetic construct QT-ELE-00-003 129 bp View
AX453873.1 emblrelpat Sequence 8 from Patent EP1213356. 3468 bp synthetic construct QT-ELE-00-003 129 bp View
AX453875.1 emblrelpat Sequence 10 from Patent EP1213356. 3546 bp synthetic construct QT-ELE-00-003 129 bp View
AX453877.1 emblrelpat Sequence 12 from Patent EP1213356. 3546 bp synthetic construct QT-ELE-00-003 129 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.