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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 187 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AR098465.1 emblrelpat Sequence 12 from patent US 6075185. 3546 bp unidentified QT-ELE-00-003 129 bp View
AR098466.1 emblrelpat Sequence 14 from patent US 6075185. 3546 bp unidentified QT-ELE-00-003 129 bp View
AR098467.1 emblrelpat Sequence 16 from patent US 6075185. 3547 bp unidentified QT-ELE-00-003 129 bp View
AR098471.1 emblrelpat Sequence 27 from patent US 6075185. 3546 bp unidentified QT-ELE-00-003 129 bp View
AR494967.1 emblrelpat Sequence 2 from patent US 6720488. 3468 bp unidentified QT-ELE-00-003 129 bp View
AR494968.1 emblrelpat Sequence 3 from patent US 6720488. 1947 bp unidentified QT-ELE-00-003 129 bp View
AR494969.1 emblrelpat Sequence 4 from patent US 6720488. 3468 bp unidentified QT-ELE-00-003 129 bp View
AR494972.1 emblrelpat Sequence 8 from patent US 6720488. 3468 bp unidentified QT-ELE-00-003 129 bp View
AR494973.1 emblrelpat Sequence 10 from patent US 6720488. 3546 bp unidentified QT-ELE-00-003 129 bp View
AR494974.1 emblrelpat Sequence 12 from patent US 6720488. 3546 bp unidentified QT-ELE-00-003 129 bp View
AR494975.1 emblrelpat Sequence 14 from patent US 6720488. 3546 bp unidentified QT-ELE-00-003 129 bp View
AR494976.1 emblrelpat Sequence 16 from patent US 6720488. 3547 bp unidentified QT-ELE-00-003 129 bp View
AR494980.1 emblrelpat Sequence 27 from patent US 6720488. 3546 bp unidentified QT-ELE-00-003 129 bp View
AX033516.1 emblrelpat Sequence 24 from Patent DE19906169. 136 bp synthetic construct QT-ELE-00-003 136 bp View
AX392800.1 emblrelpat Sequence 3 from Patent WO0215701. 1896 bp synthetic construct QT-ELE-00-003 129 bp View
AX392802.1 emblrelpat Sequence 5 from Patent WO0215701. 3582 bp synthetic construct QT-ELE-00-003 129 bp View
AX392804.1 emblrelpat Sequence 7 from Patent WO0215701. 3582 bp synthetic construct QT-ELE-00-003 129 bp View
AX392806.1 emblrelpat Sequence 9 from Patent WO0215701. 2007 bp synthetic construct QT-ELE-00-003 129 bp View
AX392808.1 emblrelpat Sequence 11 from Patent WO0215701. 13269 bp synthetic construct QT-ELE-00-003 129 bp View
AX392809.1 emblrelpat Sequence 12 from Patent WO0215701. 16179 bp synthetic construct QT-ELE-00-003 129 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.