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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 187 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
A64187.1 emblrelpat Sequence 53 from Patent WO9726339. 3474 bp synthetic construct QT-ELE-00-003 129 bp View
A64188.1 emblrelpat Sequence 54 from Patent WO9726339. 3508 bp synthetic construct QT-ELE-00-003 129 bp View
A64189.1 emblrelpat Sequence 55 from Patent WO9726339. 1961 bp synthetic construct QT-ELE-00-003 129 bp View
A68373.1 emblrelpat Sequence 53 from Patent WO9746105. 3474 bp unidentified QT-ELE-00-003 129 bp View
A68374.1 emblrelpat Sequence 54 from Patent WO9746105. 3508 bp unidentified QT-ELE-00-003 129 bp View
A68375.1 emblrelpat Sequence 55 from Patent WO9746105. 1961 bp unidentified QT-ELE-00-003 129 bp View
AR029505.1 emblrelpat Sequence 2 from patent US 5859336. 3468 bp unidentified QT-ELE-00-003 129 bp View
AR029506.1 emblrelpat Sequence 3 from patent US 5859336. 1947 bp unidentified QT-ELE-00-003 129 bp View
AR029507.1 emblrelpat Sequence 4 from patent US 5859336. 3468 bp unidentified QT-ELE-00-003 129 bp View
AR029510.1 emblrelpat Sequence 8 from patent US 5859336. 3468 bp unidentified QT-ELE-00-003 129 bp View
AR029511.1 emblrelpat Sequence 10 from patent US 5859336. 3546 bp unidentified QT-ELE-00-003 129 bp View
AR029512.1 emblrelpat Sequence 12 from patent US 5859336. 3546 bp unidentified QT-ELE-00-003 129 bp View
AR029513.1 emblrelpat Sequence 14 from patent US 5859336. 3546 bp unidentified QT-ELE-00-003 129 bp View
AR029514.1 emblrelpat Sequence 16 from patent US 5859336. 3547 bp unidentified QT-ELE-00-003 129 bp View
AR029518.1 emblrelpat Sequence 27 from patent US 5859336. 3546 bp unidentified QT-ELE-00-003 129 bp View
AR098458.1 emblrelpat Sequence 2 from patent US 6075185. 3468 bp unidentified QT-ELE-00-003 129 bp View
AR098459.1 emblrelpat Sequence 3 from patent US 6075185. 1947 bp unidentified QT-ELE-00-003 129 bp View
AR098460.1 emblrelpat Sequence 4 from patent US 6075185. 3468 bp unidentified QT-ELE-00-003 129 bp View
AR098463.1 emblrelpat Sequence 8 from patent US 6075185. 3468 bp unidentified QT-ELE-00-003 129 bp View
AR098464.1 emblrelpat Sequence 10 from patent US 6075185. 3546 bp unidentified QT-ELE-00-003 129 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.