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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1578 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MP232973.1 emblrelpat Sequence 59 from Patent EP3483260. 36718 bp synthetic construct QT-ELE-00-002 68 bp View
MP232974.1 emblrelpat Sequence 60 from Patent EP3483260. 36517 bp synthetic construct QT-ELE-00-002 68 bp View
MP232975.1 emblrelpat Sequence 61 from Patent EP3483260. 36590 bp synthetic construct QT-ELE-00-002 68 bp View
MP232976.1 emblrelpat Sequence 62 from Patent EP3483260. 35499 bp synthetic construct QT-ELE-00-002 68 bp View
MP232977.1 emblrelpat Sequence 63 from Patent EP3483260. 22042 bp synthetic construct QT-ELE-00-002 68 bp View
MP232978.1 emblrelpat Sequence 64 from Patent EP3483260. 23255 bp synthetic construct QT-ELE-00-002 68 bp View
MP246614.1 emblrelpat Sequence 35 from Patent EP3517617. 33034 bp synthetic construct QT-ELE-00-002 68 bp View
MP246615.1 emblrelpat Sequence 36 from Patent EP3517617. 33003 bp synthetic construct QT-ELE-00-002 68 bp View
MP246616.1 emblrelpat Sequence 37 from Patent EP3517617. 33951 bp synthetic construct QT-ELE-00-002 68 bp View
MP246618.1 emblrelpat Sequence 39 from Patent EP3517617. 38811 bp synthetic construct QT-ELE-00-002 68 bp View
MP246619.1 emblrelpat Sequence 40 from Patent EP3517617. 35302 bp synthetic construct QT-ELE-00-002 68 bp View
MP246620.1 emblrelpat Sequence 41 from Patent EP3517617. 35154 bp synthetic construct QT-ELE-00-002 68 bp View
MP246621.1 emblrelpat Sequence 42 from Patent EP3517617. 36102 bp synthetic construct QT-ELE-00-002 68 bp View
MP246622.1 emblrelpat Sequence 43 from Patent EP3517617. 39183 bp synthetic construct QT-ELE-00-002 68 bp View
MP246623.1 emblrelpat Sequence 44 from Patent EP3517617. 38742 bp synthetic construct QT-ELE-00-002 68 bp View
MP246624.1 emblrelpat Sequence 45 from Patent EP3517617. 38760 bp synthetic construct QT-ELE-00-002 68 bp View
MP246625.1 emblrelpat Sequence 46 from Patent EP3517617. 34862 bp synthetic construct QT-ELE-00-002 68 bp View
MP246626.1 emblrelpat Sequence 47 from Patent EP3517617. 34404 bp synthetic construct QT-ELE-00-002 68 bp View
MP246627.1 emblrelpat Sequence 48 from Patent EP3517617. 38762 bp synthetic construct QT-ELE-00-002 68 bp View
MP246628.1 emblrelpat Sequence 49 from Patent EP3517617. 35836 bp synthetic construct QT-ELE-00-002 68 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.