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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1578 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MP051841.1 emblrelpat Sequence 88 from Patent EP3404099. 5103 bp synthetic construct QT-ELE-00-002 68 bp View
MP051842.1 emblrelpat Sequence 89 from Patent EP3404099. 8802 bp synthetic construct QT-ELE-00-002 68 bp View
MP051843.1 emblrelpat Sequence 90 from Patent EP3404099. 10272 bp synthetic construct QT-ELE-00-002 68 bp View
MP051844.1 emblrelpat Sequence 91 from Patent EP3404099. 9958 bp synthetic construct QT-ELE-00-002 68 bp View
MP051845.1 emblrelpat Sequence 92 from Patent EP3404099. 10735 bp synthetic construct QT-ELE-00-002 68 bp View
MP051846.1 emblrelpat Sequence 93 from Patent EP3404099. 10421 bp synthetic construct QT-ELE-00-002 68 bp View
MP051911.1 emblrelpat Sequence 208 from Patent EP3404099. 10272 bp synthetic construct QT-ELE-00-002 68 bp View
MP051912.1 emblrelpat Sequence 209 from Patent EP3404099. 8774 bp synthetic construct QT-ELE-00-002 68 bp View
MP051913.1 emblrelpat Sequence 210 from Patent EP3404099. 9491 bp synthetic construct QT-ELE-00-002 68 bp View
MP072893.1 emblrelpat Sequence 7 from Patent EP3425046. 552 bp Streptomyces viridochromogenes QT-ELE-00-002 68 bp View
MP172468.1 emblrelpat Sequence 2 from Patent EP3472315. 8029 bp synthetic construct QT-ELE-00-002 68 bp View
MP232925.1 emblrelpat Sequence 11 from Patent EP3483260. 33003 bp synthetic construct QT-ELE-00-002 68 bp View
MP232945.1 emblrelpat Sequence 31 from Patent EP3483260. 38794 bp synthetic construct QT-ELE-00-002 68 bp View
MP232946.1 emblrelpat Sequence 32 from Patent EP3483260. 39711 bp synthetic construct QT-ELE-00-002 68 bp View
MP232947.1 emblrelpat Sequence 33 from Patent EP3483260. 38811 bp synthetic construct QT-ELE-00-002 68 bp View
MP232948.1 emblrelpat Sequence 34 from Patent EP3483260. 35302 bp synthetic construct QT-ELE-00-002 68 bp View
MP232949.1 emblrelpat Sequence 35 from Patent EP3483260. 35154 bp synthetic construct QT-ELE-00-002 68 bp View
MP232950.1 emblrelpat Sequence 36 from Patent EP3483260. 36102 bp synthetic construct QT-ELE-00-002 68 bp View
MP232951.1 emblrelpat Sequence 37 from Patent EP3483260. 39183 bp synthetic construct QT-ELE-00-002 68 bp View
MP232952.1 emblrelpat Sequence 38 from Patent EP3483260. 38742 bp synthetic construct QT-ELE-00-002 68 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.