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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1578 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JC050419.1 emblrelpat Sequence 10 from Patent EP2651209. 9206 bp synthetic construct QT-ELE-00-002 68 bp View
JC050419.1 emblrelpat Sequence 10 from Patent EP2651209. 9206 bp synthetic construct QT-ELE-00-002 68 bp View
JC050419.1 emblrelpat Sequence 10 from Patent EP2651209. 9206 bp synthetic construct QT-ELE-00-002 68 bp View
JC111158.1 emblrelpat Sequence 11 from Patent WO2013173535. 47747 bp synthetic construct QT-ELE-00-002 68 bp View
JC111159.1 emblrelpat Sequence 12 from Patent WO2013173535. 48474 bp synthetic construct QT-ELE-00-002 68 bp View
JC111160.1 emblrelpat Sequence 13 from Patent WO2013173535. 47505 bp synthetic construct QT-ELE-00-002 68 bp View
JC111161.1 emblrelpat Sequence 14 from Patent WO2013173535. 48232 bp synthetic construct QT-ELE-00-002 68 bp View
JC170511.1 emblrelpat Sequence 5 from Patent WO2013149018. 11978 bp synthetic construct QT-ELE-00-002 68 bp View
JC170512.1 emblrelpat Sequence 6 from Patent WO2013149018. 16752 bp synthetic construct QT-ELE-00-002 68 bp View
JC231803.1 emblrelpat Sequence 7 from Patent WO2013012775. 10435 bp synthetic construct QT-ELE-00-002 68 bp View
JC231804.1 emblrelpat Sequence 8 from Patent WO2013012775. 12740 bp synthetic construct QT-ELE-00-002 68 bp View
JC231821.1 emblrelpat Sequence 25 from Patent WO2013012775. 12453 bp Zea mays QT-ELE-00-002 68 bp View
JC231824.1 emblrelpat Sequence 28 from Patent WO2013012775. 4407 bp Zea mays QT-ELE-00-002 68 bp View
JC231826.1 emblrelpat Sequence 30 from Patent WO2013012775. 15810 bp synthetic construct QT-ELE-00-002 68 bp View
JC231827.1 emblrelpat Sequence 31 from Patent WO2013012775. 15329 bp synthetic construct QT-ELE-00-002 68 bp View
JC285243.1 emblrelpat Sequence 5 from Patent WO2011084632. 11978 bp synthetic construct QT-ELE-00-002 68 bp View
JC285244.1 emblrelpat Sequence 6 from Patent WO2011084632. 15992 bp synthetic construct QT-ELE-00-002 68 bp View
JC333826.1 emblrelpat Sequence 55 from Patent EP2504430. 10765 bp synthetic construct QT-ELE-00-002 68 bp View
JC531499.1 emblrelpat Sequence 61 from Patent WO2014093768. 4431 bp synthetic construct QT-ELE-00-002 68 bp View
JC583931.1 emblrelpat Sequence 11 from Patent EP2737054. 33003 bp synthetic construct QT-ELE-00-002 68 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.