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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1578 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JB255993.1 emblrelpat Sequence 11 from Patent EP2503873. 4076 bp synthetic construct QT-ELE-00-002 68 bp View
JB626237.1 emblrelpat Sequence 53 from Patent EP2585600. 13227 bp synthetic construct QT-ELE-00-002 68 bp View
JB626244.1 emblrelpat Sequence 60 from Patent EP2585600. 18713 bp synthetic construct QT-ELE-00-002 68 bp View
JB626245.1 emblrelpat Sequence 61 from Patent EP2585600. 14524 bp synthetic construct QT-ELE-00-002 68 bp View
JB626246.1 emblrelpat Sequence 62 from Patent EP2585600. 18422 bp synthetic construct QT-ELE-00-002 68 bp View
JB626247.1 emblrelpat Sequence 63 from Patent EP2585600. 14233 bp synthetic construct QT-ELE-00-002 68 bp View
JB626248.1 emblrelpat Sequence 64 from Patent EP2585600. 14575 bp synthetic construct QT-ELE-00-002 68 bp View
JB626249.1 emblrelpat Sequence 65 from Patent EP2585600. 14602 bp synthetic construct QT-ELE-00-002 68 bp View
JB626250.1 emblrelpat Sequence 66 from Patent EP2585600. 10915 bp synthetic construct QT-ELE-00-002 68 bp View
JB626258.1 emblrelpat Sequence 74 from Patent EP2585600. 14103 bp synthetic construct QT-ELE-00-002 68 bp View
JB626259.1 emblrelpat Sequence 75 from Patent EP2585600. 13812 bp synthetic construct QT-ELE-00-002 68 bp View
JC006912.1 emblrelpat Sequence 13 from Patent EP2645848. 10256 bp synthetic construct QT-ELE-00-002 68 bp View
JC006926.1 emblrelpat Sequence 27 from Patent EP2645848. 13659 bp synthetic construct QT-ELE-00-002 68 bp View
JC006927.1 emblrelpat Sequence 28 from Patent EP2645848. 14619 bp synthetic construct QT-ELE-00-002 68 bp View
JC006928.1 emblrelpat Sequence 29 from Patent EP2645848. 15294 bp synthetic construct QT-ELE-00-002 68 bp View
JC050418.1 emblrelpat Sequence 9 from Patent EP2651209. 7914 bp synthetic construct QT-ELE-00-002 68 bp View
JC050418.1 emblrelpat Sequence 9 from Patent EP2651209. 7914 bp synthetic construct QT-ELE-00-002 68 bp View
JC050418.1 emblrelpat Sequence 9 from Patent EP2651209. 7914 bp synthetic construct QT-ELE-00-002 68 bp View
JC050418.1 emblrelpat Sequence 9 from Patent EP2651209. 7914 bp synthetic construct QT-ELE-00-002 68 bp View
JC050419.1 emblrelpat Sequence 10 from Patent EP2651209. 9206 bp synthetic construct QT-ELE-00-002 68 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.