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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1578 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HZ787303.1 emblrelpat JP 2016502856-A/4: Improved Soybean... 1818 bp synthetic construct QT-ELE-00-002 68 bp View
HZ787305.1 emblrelpat JP 2016502856-A/6: Improved Soybean... 1818 bp synthetic construct QT-ELE-00-002 68 bp View
I43995.1 emblrelpat Sequence 1 from patent US 5633434. 559 bp unidentified QT-ELE-00-002 68 bp View
I43996.1 emblrelpat Sequence 2 from patent US 5633434. 559 bp unidentified QT-ELE-00-002 68 bp View
JA216561.1 emblrelpat Sequence 38 from Patent EP2309843. 15162 bp synthetic construct QT-ELE-00-002 68 bp View
JA216562.1 emblrelpat Sequence 39 from Patent EP2309843. 15162 bp synthetic construct QT-ELE-00-002 68 bp View
JA367667.1 emblrelpat Sequence 10 from Patent EP2319934. 7545 bp synthetic construct QT-ELE-00-002 68 bp View
JA367668.1 emblrelpat Sequence 11 from Patent EP2319934. 11643 bp synthetic construct QT-ELE-00-002 68 bp View
JA367701.1 emblrelpat Sequence 10 from Patent EP2319935. 7545 bp synthetic construct QT-ELE-00-002 68 bp View
JA367702.1 emblrelpat Sequence 11 from Patent EP2319935. 11643 bp synthetic construct QT-ELE-00-002 68 bp View
JA396782.1 emblrelpat Sequence 1 from Patent EP2333082. 15490 bp synthetic construct QT-ELE-00-002 68 bp View
JA396783.1 emblrelpat Sequence 2 from Patent EP2333082. 9382 bp synthetic construct QT-ELE-00-002 68 bp View
JA607115.1 emblrelpat Sequence 116 from Patent EP2370575. 2349 bp synthetic construct QT-ELE-00-002 68 bp View
JA781826.1 emblrelpat Sequence 3 from Patent EP2513326. 11361 bp synthetic construct QT-ELE-00-002 68 bp View
JB078720.1 emblrelpat Sequence 1 from Patent EP2488650. 8448 bp synthetic construct QT-ELE-00-002 68 bp View
JB078721.1 emblrelpat Sequence 2 from Patent EP2488650. 8448 bp synthetic construct QT-ELE-00-002 68 bp View
JB090926.1 emblrelpat Sequence 1 from Patent EP2504456. 10212 bp synthetic construct QT-ELE-00-002 68 bp View
JB090933.1 emblrelpat Sequence 1 from Patent EP2503874. 10212 bp synthetic construct QT-ELE-00-002 68 bp View
JB090934.1 emblrelpat Sequence 1 from Patent EP2503871. 10212 bp synthetic construct QT-ELE-00-002 68 bp View
JB230918.1 emblrelpat Sequence 24 from Patent EP2504439. 10765 bp synthetic construct QT-ELE-00-002 68 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.