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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1578 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HW661023.1 emblrelpat JP 2014523750-A/47: Production of D... 36767 bp synthetic construct QT-ELE-00-002 68 bp View
HW661024.1 emblrelpat JP 2014523750-A/48: Production of D... 35494 bp synthetic construct QT-ELE-00-002 68 bp View
HW661025.1 emblrelpat JP 2014523750-A/49: Production of D... 37935 bp synthetic construct QT-ELE-00-002 68 bp View
HW661026.1 emblrelpat JP 2014523750-A/50: Production of D... 38239 bp synthetic construct QT-ELE-00-002 68 bp View
HW661027.1 emblrelpat JP 2014523750-A/51: Production of D... 34850 bp synthetic construct QT-ELE-00-002 68 bp View
HW661028.1 emblrelpat JP 2014523750-A/52: Production of D... 35154 bp synthetic construct QT-ELE-00-002 68 bp View
HW661029.1 emblrelpat JP 2014523750-A/53: Production of D... 38074 bp synthetic construct QT-ELE-00-002 68 bp View
HW661030.1 emblrelpat JP 2014523750-A/54: Production of D... 36718 bp synthetic construct QT-ELE-00-002 68 bp View
HW661031.1 emblrelpat JP 2014523750-A/55: Production of D... 36517 bp synthetic construct QT-ELE-00-002 68 bp View
HW661032.1 emblrelpat JP 2014523750-A/56: Production of D... 36590 bp synthetic construct QT-ELE-00-002 68 bp View
HW661033.1 emblrelpat JP 2014523750-A/57: Production of D... 35499 bp synthetic construct QT-ELE-00-002 68 bp View
HW661034.1 emblrelpat JP 2014523750-A/58: Production of D... 22042 bp synthetic construct QT-ELE-00-002 68 bp View
HW661035.1 emblrelpat JP 2014523750-A/59: Production of D... 23255 bp synthetic construct QT-ELE-00-002 68 bp View
HW800348.1 emblrelpat JP 2014531197-A/3: INSECT RESISTANT... 12381 bp synthetic construct QT-ELE-00-002 68 bp View
HW800359.1 emblrelpat JP 2014531197-A/14: INSECT RESISTAN... 15294 bp synthetic construct QT-ELE-00-002 68 bp View
HW800360.1 emblrelpat JP 2014531197-A/15: INSECT RESISTAN... 10212 bp synthetic construct QT-ELE-00-002 68 bp View
HZ035110.1 emblrelpat JP 2015508668-A/3: SUGARCANE BACILL... 1828 bp Streptomyces viridochromogenes QT-ELE-00-002 68 bp View
HZ035112.1 emblrelpat JP 2015508668-A/5: SUGARCANE BACILL... 1828 bp Streptomyces viridochromogenes QT-ELE-00-002 68 bp View
HZ035114.1 emblrelpat JP 2015508668-A/7: SUGARCANE BACILL... 1828 bp Streptomyces viridochromogenes QT-ELE-00-002 68 bp View
HZ035116.1 emblrelpat JP 2015508668-A/9: SUGARCANE BACILL... 1828 bp Streptomyces viridochromogenes QT-ELE-00-002 68 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.