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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1578 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HW315911.1 emblrelpat JP 2013529086-A/39: Production of D... 38742 bp synthetic construct QT-ELE-00-002 68 bp View
HW315912.1 emblrelpat JP 2013529086-A/40: Production of D... 38760 bp synthetic construct QT-ELE-00-002 68 bp View
HW315913.1 emblrelpat JP 2013529086-A/41: Production of D... 34862 bp synthetic construct QT-ELE-00-002 68 bp View
HW315914.1 emblrelpat JP 2013529086-A/42: Production of D... 34404 bp synthetic construct QT-ELE-00-002 68 bp View
HW315915.1 emblrelpat JP 2013529086-A/43: Production of D... 38762 bp synthetic construct QT-ELE-00-002 68 bp View
HW315916.1 emblrelpat JP 2013529086-A/44: Production of D... 35836 bp synthetic construct QT-ELE-00-002 68 bp View
HW315917.1 emblrelpat JP 2013529086-A/45: Production of D... 47165 bp synthetic construct QT-ELE-00-002 68 bp View
HW315918.1 emblrelpat JP 2013529086-A/46: Production of D... 46978 bp synthetic construct QT-ELE-00-002 68 bp View
HW315919.1 emblrelpat JP 2013529086-A/47: Production of D... 41726 bp synthetic construct QT-ELE-00-002 68 bp View
HW315920.1 emblrelpat JP 2013529086-A/48: Production of D... 36797 bp synthetic construct QT-ELE-00-002 68 bp View
HW315921.1 emblrelpat JP 2013529086-A/49: Production of D... 42674 bp synthetic construct QT-ELE-00-002 68 bp View
HW315922.1 emblrelpat JP 2013529086-A/50: Production of D... 40406 bp synthetic construct QT-ELE-00-002 68 bp View
HW315923.1 emblrelpat JP 2013529086-A/51: Production of D... 39630 bp synthetic construct QT-ELE-00-002 68 bp View
HW315924.1 emblrelpat JP 2013529086-A/52: Production of D... 36936 bp synthetic construct QT-ELE-00-002 68 bp View
HW315925.1 emblrelpat JP 2013529086-A/53: Production of D... 36767 bp synthetic construct QT-ELE-00-002 68 bp View
HW315926.1 emblrelpat JP 2013529086-A/54: Production of D... 35494 bp synthetic construct QT-ELE-00-002 68 bp View
HW315927.1 emblrelpat JP 2013529086-A/55: Production of D... 37935 bp synthetic construct QT-ELE-00-002 68 bp View
HW315928.1 emblrelpat JP 2013529086-A/56: Production of D... 38239 bp synthetic construct QT-ELE-00-002 68 bp View
HW315929.1 emblrelpat JP 2013529086-A/57: Production of D... 34850 bp synthetic construct QT-ELE-00-002 68 bp View
HW315930.1 emblrelpat JP 2013529086-A/58: Production of D... 35154 bp synthetic construct QT-ELE-00-002 68 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.