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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 10340 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB626672.1 nt Gateway vector pUGW15 DNA, complete... 6114 bp Gateway vector pUGW15 QT-ELE-00-001 79 bp View
AB626673.1 nt Gateway vector pUGW17 DNA, complete... 6181 bp Gateway vector pUGW17 QT-ELE-00-001 79 bp View
AB626674.1 nt Gateway vector pUGW18 DNA, complete... 6165 bp Gateway vector pUGW18 QT-ELE-00-001 79 bp View
AB626675.1 nt Gateway vector pUGW20 DNA, complete... 6412 bp Gateway vector pUGW20 QT-ELE-00-001 79 bp View
AB626676.1 nt Gateway vector pUGW21 DNA, complete... 6399 bp Gateway vector pUGW21 QT-ELE-00-001 79 bp View
AB626677.1 nt Gateway vector pUGW23 DNA, complete... 6688 bp Gateway vector pUGW23 QT-ELE-00-001 79 bp View
AB626678.1 nt Gateway vector pUGW24 DNA, complete... 6672 bp Gateway vector pUGW24 QT-ELE-00-001 79 bp View
AB626679.1 nt Gateway vector pUGW26 DNA, complete... 6043 bp Gateway vector pUGW26 QT-ELE-00-001 79 bp View
AB626680.1 nt Gateway vector pUGW27 DNA, complete... 6027 bp Gateway vector pUGW27 QT-ELE-00-001 79 bp View
AB626683.1 nt Gateway vector pUGW41 DNA, complete... 6727 bp Gateway vector pUGW41 QT-ELE-00-001 79 bp View
AB626684.1 nt Gateway vector pUGW42 DNA, complete... 6711 bp Gateway vector pUGW42 QT-ELE-00-001 79 bp View
AB626685.1 nt Gateway vector pUGW44 DNA, complete... 6727 bp Gateway vector pUGW44 QT-ELE-00-001 79 bp View
AB626686.1 nt Gateway vector pUGW45 DNA, complete... 6711 bp Gateway vector pUGW45 QT-ELE-00-001 79 bp View
AB626687.1 nt Gateway vector pUGW51 DNA, complete... 6727 bp Gateway vector pUGW51 QT-ELE-00-001 79 bp View
AB626688.1 nt Gateway vector pUGW52 DNA, complete... 6708 bp Gateway vector pUGW52 QT-ELE-00-001 79 bp View
AB626689.1 nt Gateway vector pUGW54 DNA, complete... 6688 bp Gateway vector pUGW54 QT-ELE-00-001 79 bp View
AB626690.1 nt Gateway vector pUGW55 DNA, complete... 6669 bp Gateway vector pUGW55 QT-ELE-00-001 79 bp View
AB626691.1 nt Gateway vector pUGW60 DNA, complete... 6724 bp Gateway vector pUGW60 QT-ELE-00-001 79 bp View
AB626692.1 nt Gateway vector pUGW61 DNA, complete... 6705 bp Gateway vector pUGW61 QT-ELE-00-001 79 bp View
AB626693.1 nt Gateway vector pGWnY DNA, complete ... 6535 bp Gateway vector pGWnY QT-ELE-00-001 79 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.