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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 27 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB209952.1 emblreltgn Glycine max transgenic cp4epsps gen... 2457 bp Glycine max QT-CON-00-002 88 bp View
AB209952.1 nt Glycine max transgenic cp4epsps gen... 2457 bp Glycine max QT-CON-00-002 88 bp View
AF464188.1 nt Glycine max CP4EPSPS gene, complete... 1529 bp Glycine max QT-CON-00-002 88 bp View
AR690568.1 emblrelpat Sequence 74 from patent US 6906245. 1587 bp unidentified QT-CON-00-002 88 bp View
AY125353.1 nt Synthetic construct CP4EPSPS protei... 1946 bp synthetic construct QT-CON-00-002 88 bp View
AY592954.1 emblreltgn Glycine max transgenic chloroplast ... 707 bp Glycine max QT-CON-00-002 88 bp View
AY592954.1 nt Glycine max transgenic chloroplast ... 707 bp Glycine max QT-CON-00-002 88 bp View
BD015569.1 emblrelpat JP 2001190168-A/3: Herbicide-tolera... 1587 bp unidentified QT-CON-00-002 88 bp View
BD170162.1 emblrelpat WO 2002034943-A/75: Method of quant... 239 bp synthetic construct QT-CON-00-002 88 bp View
BD170163.1 emblrelpat WO 2002034943-A/76: Method of quant... 528 bp synthetic construct QT-CON-00-002 88 bp View
BD295561.1 emblrelpat WO 2003027283-A/2: Nucleic acid fra... 402 bp synthetic construct QT-CON-00-002 109 bp View
DD435966.1 emblrelpat Method for quantitative detection o... 528 bp synthetic construct QT-CON-00-002 88 bp View
DI201691.1 emblrelpat KR 1020110124606-A/1: ANTIBIOTICS M... 1604 bp unidentified QT-CON-00-002 88 bp View
DI201813.1 emblrelpat KR 1020110126306-A/53: A method for... 1650 bp artificial sequences QT-CON-00-002 88 bp View
DJ400964.1 emblrelpat Method for detecting and quantifyin... 121 bp unidentified QT-CON-00-002 88 bp View
GX183323.1 emblrelpat Sequence 75 from patent US 7709232. 239 bp unidentified QT-CON-00-002 88 bp View
GX183324.1 emblrelpat Sequence 76 from patent US 7709232. 528 bp unidentified QT-CON-00-002 88 bp View
GY281747.1 emblrelpat Sequence 74 from patent US 7973219. 1587 bp unidentified QT-CON-00-002 88 bp View
GZ298427.1 emblrelpat Sequence 32 from patent US 8173400. 121 bp unidentified QT-CON-00-002 88 bp View
KH534098.1 emblrelpat Sequence 25 from patent US 9562267. 8605 bp unidentified QT-CON-00-002 88 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.